
Publications
Papers from the Elias Lab. Search them, or choose a topic.
86 publications.
Also on Google Scholar. For PDF reprints, contact us.
2026
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Enzymatic quorum quenching alters the phyllosphere microbiome and suppresses a bacterial-induced plant disease
Scientific Reports 16(1):25561 (2026)
Shows that a formulated SsoPox lactonase spray limits the shift in the corn leaf microbial community caused by Goss's wilt infection, slightly reduces the pathogen, and reduces disease severity.
Read the article: Enzymatic quorum quenching alters the phyllosphere microbiome and suppresses a bacterial-induced plant disease PubMed record: Enzymatic quorum quenching alters the phyllosphere microbiome and suppresses a bacterial-induced plant disease
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Structure-Based Insights into the Molecular Mechanisms of LuxR-Type Quorum Sensing Receptors
Annual Review of Microbiology 80(1):287-308 (2026)
Reviews recent structural and mechanistic insights into LuxR-type receptors, including their interactions with small molecules, protein partners and DNA, and identifies critical knowledge gaps.
Read the article: Structure-Based Insights into the Molecular Mechanisms of LuxR-Type Quorum Sensing Receptors PubMed record: Structure-Based Insights into the Molecular Mechanisms of LuxR-Type Quorum Sensing Receptors
2025
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Key paper
N-acyl homoserine lactone signaling modulates bacterial community associated with human dental plaque
npj Biofilms and Microbiomes 11(1):204 (2025)
Demonstrates that AHL-based quorum sensing modulates microbial community composition in human dental plaque, with differential roles under aerobic versus anaerobic conditions.
Read the article: N-acyl homoserine lactone signaling modulates bacterial community associated with human dental plaque PubMed record: N-acyl homoserine lactone signaling modulates bacterial community associated with human dental plaque
In the news ScienceAlert, news story about: N-acyl homoserine lactone signaling modulates bacterial community associated with human dental plaque Yahoo News, news story about: N-acyl homoserine lactone signaling modulates bacterial community associated with human dental plaque

View at full size: picture for N-acyl homoserine lactone signaling modulates bacterial community associated with human dental plaque Podcast about this paper By NotebookLM – AI
6 min
Read the transcript of the podcast: N-acyl homoserine lactone signaling modulates bacterial community associated with human dental plaque
Host 1: Welcome to today's Deep Dive. So our mission today, well, we are exploring how hacking bacterial communication in your mouth could actually revolutionize medicine.
Host 2: Yeah, it's a pretty wild concept.
Host 1: Right, and our sources for this are a research brief and a study from npj Biofilms and Microbiomes. Okay, let's unpack this, because the text sets up this really great analogy. Like, dental plaque isn't just grime to be scrubbed away. It is actually a complex forest ecosystem.
Host 2: Exactly, a microscopic forest. And it starts with these harmless early settlers.
Host 1: Like pioneer species, right?
Host 2: Yeah.
Host 1: Like Streptococcus.
Host 2: Yeah, Streptococcus. But if things get out of balance, that forest basically gets overrun by these dangerous late colonizers. It's a group of disease-causing bacteria they call the red complex.
Host 1: Which sounds incredibly ominous. But how do these microscopic settlers coordinate an entire ecosystem? Because, I mean, they are constantly talking to each other.
Host 2: Right, they have to. Just like in any real forest, they need to communicate to survive and thrive.
Host 1: So I was picturing this like a bacterial group chat. You have, what, like 700 different species of oral bacteria living there, and they are constantly sending each other these chemical text messages.
Host 2: That is a great way to put it. And those chemical texts are called AHLs, or N-acyl homoserine lactones.
Host 1: Okay, AHLs.
Host 2: Yeah. And what's fascinating here is this whole mechanism is called quorum sensing. It's how bacteria organize themselves on a mass scale.
Host 1: So they just release these AHL molecules into their environment.
Host 2: Exactly. They send out the signals, and when enough bacteria do this, the concentration hits a tipping point, a quorum.
Host 1: Oh wow, so they basically take a roll call.
Host 2: Yeah, and hitting that quorum physically triggers receptors in the bacteria. It essentially tells the community, you know, we have the numbers, let's change our behavior. Let's build a biofilm fortress or, you know, go on the attack.
Host 1: But this group chat doesn't work the exact same way everywhere, which is where I admit I got a bit hung up. Because of one crucial environmental factor: oxygen.
Host 2: Right, oxygen changes everything here.
Host 1: So if the bacteria living deep down in those oxygen-deprived anaerobic zones below your gum line don't even produce these AHL messages, why do the texts even matter to them?
Host 2: Well, if we connect this to the bigger picture, you really have to look at the physical landscape of the tooth.
Host 1: Okay.
Host 2: So above the gum line, in the aerobic zones, there's plenty of oxygen, right? The bacteria there actively produce these AHL signals.
Host 1: Right.
Host 2: But those chemical signals don't just stay put. They diffuse downward into those deep oxygen-deprived pockets below the gum line.
Host 1: Wait, so the anaerobic bacteria are basically reading messages sent by the aerobic bacteria?
Host 2: Yes, exactly. And the researchers actually proved this in the lab. When they artificially added AHLs to those oxygen-deprived zones, it actively promoted the disease-causing late colonizers.
Host 1: Like Porphyromonas gingivalis.
Host 2: Right. The bad actors were receiving the signal to just take over the ecosystem.
Host 1: Okay, so if receiving these messages triggers a hostile bacterial takeover, it sounds like our best defense isn't actually killing the bacteria, but just, I don't know, jamming their cell service, deleting the texts.
Host 2: Well, this raises an important question. And it's exactly the strategy the researchers tested. They used a process called quorum quenching.
Host 1: Quorum quenching?
Host 2: Yeah, by deploying these specialized enzymes called lactonases. Specifically, they used ones called SsoPox and GcL.
Host 1: Okay, and these enzymes, they destroy the AHL signals.
Host 2: Right, before the bacteria can even read them. They act like chemical scissors. They literally snip the AHL molecules in half, so they no longer fit into the bacterial receptors.
Host 1: Here is where it gets really interesting. Because you would think messing with their communication would just cause random chaos, but deleting these messages actually enriched the good, health-associated bacteria.
Host 2: Yep. The harmless pioneer species just thrived.
Host 1: And furthermore, using different lactonase enzymes physically changed how the bacterial community metabolized sugars and resources.
Host 2: Exactly. When you cut that specific communication line, the bacteria just never received the genetic instructions required to turn on their sugar-fermenting, biofilm-building machinery.
Host 1: So different enzymes act like custom filters?
Host 2: Right. By deploying different lactonases, you filter out different messages, which fundamentally changes their behavior. It reverts the ecosystem back to a healthy state without having to just eradicate everything in sight.
Host 1: So what does this all mean for you listening? It means the future of healthcare isn't about waging a nuclear war on your microbiome with antibiotics.
Host 2: No, it's a complete paradigm shift. Instead of destroying the entire forest, we are just managing the chatter to keep the dangerous predators at bay.
Host 1: Right, strategically cutting communication lines. And the sources note this could eventually be used to treat microbiome dysbiosis throughout the entire body, and maybe even target dysbiosis linked to certain types of cancer.
Host 2: The potential applications are honestly staggering.
Host 1: Absolutely. Well, before we go, I want to leave you with one final provocative thought to explore on your own. If bacteria use these specific chemical dialects to coordinate and build complex, impenetrable biofilm fortresses on our teeth, could human engineers one day use synthetic bacterial chatter to grow living, self-repairing building materials for our physical cities?
Host 2: Oh wow. Like a concrete skyscraper that heals its own cracks.
Host 1: Exactly. All because it's running on a microscopic group chat. Just something to chew on.
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Durable formulations of quorum quenching enzymes
Scientific Reports 15(1):27435 (2025)
Systematically evaluates lactonase enzyme stability across 16 crop adjuvants and 5 coating bases over 250 days, establishing a framework for industrial quorum quenching formulations.
Read the article: Durable formulations of quorum quenching enzymes PubMed record: Durable formulations of quorum quenching enzymes
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Impeding Quorum Sensing Among the Intestinal Microbiota Impacts the Metastatic Rate of Colorectal Cancer
Cancer Medicine 14(12):e71009 (2025)
Reveals that disrupting bacterial communication in the gut microbiota affects colorectal cancer metastasis rates in a sex-dependent manner, suggesting QQ as a potential cancer therapy.
Read the article: Impeding Quorum Sensing Among the Intestinal Microbiota Impacts the Metastatic Rate of Colorectal Cancer PubMed record: Impeding Quorum Sensing Among the Intestinal Microbiota Impacts the Metastatic Rate of Colorectal Cancer
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NIH's 15% cap: a cost comparison and research outlook
EMBO Reports 26(7):1676-1678 (2025)
Analyzes the impact of the US government's NIH overhead rate cap on research infrastructure funding relative to international peers.
Read the article: NIH's 15% cap: a cost comparison and research outlook PubMed record: NIH's 15% cap: a cost comparison and research outlook
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A novel screening system to characterize and engineer quorum quenching lactonases
Biotechnology and Bioengineering 122(4):922-935 (2025)
Presents a new medium-throughput screening system for lactonases that identified variants with up to 1900-fold altered substrate specificity.
Read the article: A novel screening system to characterize and engineer quorum quenching lactonases PubMed record: A novel screening system to characterize and engineer quorum quenching lactonases
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α-N-Methyltransferase regiospecificity is mediated by proximal, redundant enzyme–substrate interactions
Protein Science 34:e70021 (2025)
Characterizes substrate recognition and iterative activity of borosin N-methyltransferases through structural and kinetic analyses of over 40 peptide variants.
Read the article: α-N-Methyltransferase regiospecificity is mediated by proximal, redundant enzyme–substrate interactions PubMed record: α-N-Methyltransferase regiospecificity is mediated by proximal, redundant enzyme–substrate interactions
2024
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Targeting Quorum Sensing for Manipulation of Commensal Microbiota
BMC Biotechnology 24:106 (2024)
Comprehensive review of quorum sensing diversity, host-microbe interactions, and therapeutic approaches for precision modification of the microbiota.
Read the article: Targeting Quorum Sensing for Manipulation of Commensal Microbiota PubMed record: Targeting Quorum Sensing for Manipulation of Commensal Microbiota
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Quorum Quenching Enzymes Disrupt Bacterial Communication in a Sex- and Dose-Dependent Manner
Animal Models and Experimental Medicine 8(3):473 (2024)
Demonstrates sex- and dose-dependent effects of quorum quenching enzymes on bacterial communication in animal models.
Read the article: Quorum Quenching Enzymes Disrupt Bacterial Communication in a Sex- and Dose-Dependent Manner PubMed record: Quorum Quenching Enzymes Disrupt Bacterial Communication in a Sex- and Dose-Dependent Manner
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Catalytic Redundancies and Conformational Plasticity Drives Selectivity and Promiscuity in Quorum Quenching Lactonases
JACS Au 4(9):3519-3536 (2024)
Reveals that GcL lactonase hydrolyzes substrates through at least two different mechanisms depending on substrate structure, suggesting mechanistic promiscuity is a shared feature among metallo-β-lactamase-like lactonases.
Read the article: Catalytic Redundancies and Conformational Plasticity Drives Selectivity and Promiscuity in Quorum Quenching Lactonases PubMed record: Catalytic Redundancies and Conformational Plasticity Drives Selectivity and Promiscuity in Quorum Quenching Lactonases
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Dinickel enzyme evolved to metabolize the pharmaceutical metformin and its implications for wastewater and human microbiomes
PNAS 121:e2312652121 (2024)
Identifies and characterizes the first genes responsible for metformin biodegradation, revealing a nickel-dependent hydrolase found in wastewater treatment plants worldwide.
Read the article: Dinickel enzyme evolved to metabolize the pharmaceutical metformin and its implications for wastewater and human microbiomes PubMed record: Dinickel enzyme evolved to metabolize the pharmaceutical metformin and its implications for wastewater and human microbiomes
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The ineligibility barrier for international researchers in US academia
EMBO Reports 25(2):457-458 (2024)
Highlights how US funding restrictions on citizenship negatively impact career options for international scientists working in the US.
Read the article: The ineligibility barrier for international researchers in US academia PubMed record: The ineligibility barrier for international researchers in US academia
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Engineering Quorum Quenching Acylases with Improved Kinetic and Biochemical Properties
Protein Science 33(4):e4954 (2024)
Engineers AHL acylases with up to 13°C melting point increases and >10-fold improved kinetics, capturing an acyl-enzyme intermediate confirming catalytic mechanism.
Read the article: Engineering Quorum Quenching Acylases with Improved Kinetic and Biochemical Properties PubMed record: Engineering Quorum Quenching Acylases with Improved Kinetic and Biochemical Properties
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Changes in Active Site Loop Conformation Relate to the Transition toward a Novel Enzymatic Activity
JACS Au 4(5):1941-1953 (2024)
Shows that active site loop rearrangements drive >1000-fold improvements in phosphotriesterase activity, revealing how enzymes transition between functions.
Read the article: Changes in Active Site Loop Conformation Relate to the Transition toward a Novel Enzymatic Activity PubMed record: Changes in Active Site Loop Conformation Relate to the Transition toward a Novel Enzymatic Activity
2023
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RiPP enzyme heterocomplex structure-guided discovery of a bacterial borosin α-N-methylated peptide natural product
RSC Chemical Biology 4(10):804-816 (2023)
Determines crystal structures of RiPP enzyme-substrate heterocomplexes to reveal how precursor peptide variants affect methyltransferase recognition and backbone α-N-methylation regiospecificity.
Read the article: RiPP enzyme heterocomplex structure-guided discovery of a bacterial borosin α-N-methylated peptide natural product PubMed record: RiPP enzyme heterocomplex structure-guided discovery of a bacterial borosin α-N-methylated peptide natural product
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Structure and Functional Properties of Bacterial Communities in Surface Sediments of Lake Villarrica in Southern Chile
Microbial Ecology 86(3):1513-1533 (2023)
Reveals microbial community structure and nitrogen/phosphorus cycling functions in sediments of a nutrient-impacted Chilean lake.
Read the article: Structure and Functional Properties of Bacterial Communities in Surface Sediments of Lake Villarrica in Southern Chile PubMed record: Structure and Functional Properties of Bacterial Communities in Surface Sediments of Lake Villarrica in Southern Chile
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Field testing of an enzymatic quorum quencher coating additive to reduce biocorrosion of steel
Microbiology Spectrum 11(5):e0517822 (2023)
Demonstrates that lactonase-containing paint reduced steel biocorrosion by 39% over 21 months in Lake Superior field tests.
Read the article: Field testing of an enzymatic quorum quencher coating additive to reduce biocorrosion of steel PubMed record: Field testing of an enzymatic quorum quencher coating additive to reduce biocorrosion of steel
2022
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Applying molecular and phenotypic screening assays to identify efficient quorum quenching lactonases
Enzyme and Microbial Technology 160:110092 (2022)
Develops a suite of molecular and phenotypic screening methods for lactonase engineering, identifying variants with up to 44.5-fold improved kinetics.
Read the article: Applying molecular and phenotypic screening assays to identify efficient quorum quenching lactonases PubMed record: Applying molecular and phenotypic screening assays to identify efficient quorum quenching lactonases
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Evidence for complex interplay between quorum sensing and antibiotic resistance in Pseudomonas aeruginosa
Microbiology Spectrum 10(6):e0126922 (2022)
Systematic evaluation of 222 antibiotics reveals QS signal disruption affects resistance to 40% of tested compounds in P. aeruginosa, though not always synergistically.
Read the article: Evidence for complex interplay between quorum sensing and antibiotic resistance in Pseudomonas aeruginosa PubMed record: Evidence for complex interplay between quorum sensing and antibiotic resistance in Pseudomonas aeruginosa
2021
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Conformational rearrangements enable iterative backbone N-methylation in RiPP biosynthesis
Nature Communications 12(1):5355 (2021)
Discovers 'split borosin' RiPP pathways in Shewanella oneidensis, revealing how conformational changes enable iterative peptide backbone methylation.
Read the article: Conformational rearrangements enable iterative backbone N-methylation in RiPP biosynthesis PubMed record: Conformational rearrangements enable iterative backbone N-methylation in RiPP biosynthesis
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Discovery of an ultra-specific triuret hydrolase (TrtA) establishes the triuret biodegradation pathway
Journal of Biological Chemistry 296:100055 (2021)
Identifies TrtA, an exquisitely specific triuret hydrolase, and establishes the first metabolic pathway for triuret breakdown in bacteria.
Read the article: Discovery of an ultra-specific triuret hydrolase (TrtA) establishes the triuret biodegradation pathway PubMed record: Discovery of an ultra-specific triuret hydrolase (TrtA) establishes the triuret biodegradation pathway
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Dan Salah Tawfik (1955-2021)—A giant of protein evolution
EMBO Reports 22:e53256 (2021)
Tribute to Dan Tawfik, a pioneering scientist in protein evolution and enzyme promiscuity.
Read the article: Dan Salah Tawfik (1955-2021)—A giant of protein evolution
2020
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Engineering Acyl-Homoserine Lactone-Interfering Enzymes Towards Bacterial Control
Journal of Biological Chemistry 295(37):12993-13007 (2020)
Comprehensive review of screening, engineering, and applications of AHL-modifying enzymes for bacterial control.
Read the article: Engineering Acyl-Homoserine Lactone-Interfering Enzymes Towards Bacterial Control PubMed record: Engineering Acyl-Homoserine Lactone-Interfering Enzymes Towards Bacterial Control
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Quorum quenching enzymes and their effects on virulence, biofilm and microbiomes: a review of recent advances
Expert Review of Anti-infective Therapy 18(12):1221-1233 (2020)
Reviews how stable quorum quenching enzymes affect virulence, biofilm, and complex microbial communities beyond traditional single-species models.
Read the article: Quorum quenching enzymes and their effects on virulence, biofilm and microbiomes: a review of recent advances PubMed record: Quorum quenching enzymes and their effects on virulence, biofilm and microbiomes: a review of recent advances
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Lactonase Specificity Is Key to Quorum Quenching in Pseudomonas aeruginosa
Frontiers in Microbiology 11:762 (2020)
Shows that lactonase substrate specificity critically determines quenching efficacy, with major impacts on PQS regulation and pathogenicity.
Read the article: Lactonase Specificity Is Key to Quorum Quenching in Pseudomonas aeruginosa PubMed record: Lactonase Specificity Is Key to Quorum Quenching in Pseudomonas aeruginosa
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Effects of Signal Disruption Depends on the Substrate Preference of the Lactonase
Frontiers in Microbiology 10:3003 (2020)
Evaluates quorum quenching across 39 cystic fibrosis P. aeruginosa isolates, showing lactonase AHL preference is key to inhibitory spectrum.
Read the article: Effects of Signal Disruption Depends on the Substrate Preference of the Lactonase PubMed record: Effects of Signal Disruption Depends on the Substrate Preference of the Lactonase
2019
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Signal Disruption Leads to Changes in Bacterial Community Population
Frontiers in Microbiology 10:611 (2019)
First demonstration that enzymatic signal disruption reshapes complex microbial community population structures.
Read the article: Signal Disruption Leads to Changes in Bacterial Community Population PubMed record: Signal Disruption Leads to Changes in Bacterial Community Population
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Evaluation of biological and enzymatic quorum quencher coating additives to reduce biocorrosion of steel
PLoS One 14:e0217059 (2019)
Initial evaluation of quorum quenching lactonase coatings for reducing microbially influenced corrosion on steel surfaces.
Read the article: Evaluation of biological and enzymatic quorum quencher coating additives to reduce biocorrosion of steel PubMed record: Evaluation of biological and enzymatic quorum quencher coating additives to reduce biocorrosion of steel
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The Structural Determinants Accounting for the Broad Substrate Specificity of the Quorum Quenching Lactonase GcL
ChemBioChem 20(14):1848-1855 (2019)
Identifies structural features enabling broad substrate specificity in lactonase GcL. Designated a Very Important Paper (VIP) by the journal.
Read the article: The Structural Determinants Accounting for the Broad Substrate Specificity of the Quorum Quenching Lactonase GcL PubMed record: The Structural Determinants Accounting for the Broad Substrate Specificity of the Quorum Quenching Lactonase GcL
2018
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Structural and Biochemical Characterization of AaL, a Quorum Quenching Lactonase with Unusual Kinetic Properties
Scientific Reports 8:11262 (2018)
Crystal structure and kinetic characterization of AaL lactonase, revealing unusual catalytic properties among quorum quenching enzymes.
Read the article: Structural and Biochemical Characterization of AaL, a Quorum Quenching Lactonase with Unusual Kinetic Properties PubMed record: Structural and Biochemical Characterization of AaL, a Quorum Quenching Lactonase with Unusual Kinetic Properties
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Interference in Bacterial Quorum Sensing: a Biopharmaceutical Perspective
Frontiers in Pharmacology 9:203 (2018)
Reviews the biopharmaceutical potential of quorum sensing interference strategies for treating bacterial infections.
Read the article: Interference in Bacterial Quorum Sensing: a Biopharmaceutical Perspective PubMed record: Interference in Bacterial Quorum Sensing: a Biopharmaceutical Perspective
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Structural basis of ribosomal peptide macrocyclization in plants
eLife 7:16745 (2018)
Reveals the structural basis for how plant asparaginyl endopeptidases catalyze peptide macrocyclization in RiPP biosynthesis.
Read the article: Structural basis of ribosomal peptide macrocyclization in plants PubMed record: Structural basis of ribosomal peptide macrocyclization in plants
2017
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Decontamination of organophosphorus compounds: Towards new alternatives
Annales Pharmaceutiques Françaises 75(3):209-226 (2017)
Reviews current and emerging chemical, physical and biological strategies to decontaminate organophosphorus compounds, with an emphasis on enzymatic remediation and the hyperthermostable enzyme SsoPox.
Read the article: Decontamination of organophosphorus compounds: Towards new alternatives PubMed record: Decontamination of organophosphorus compounds: Towards new alternatives
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Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase
Scientific Reports 7:16745 (2017)
Structure-based engineering converts a thermostable lactonase into a broad-spectrum phosphotriesterase for insecticide decontamination.
Read the article: Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase PubMed record: Rational engineering of a native hyperthermostable lactonase into a broad spectrum phosphotriesterase
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Similar Active Sites and Mechanisms Do Not Lead to Cross-Promiscuity in Organophosphate Hydrolysis
JACS (2017)
Computational analysis reveals why structurally similar enzymes don't exhibit cross-promiscuity, with implications for biotherapeutic design.
Read the article: Similar Active Sites and Mechanisms Do Not Lead to Cross-Promiscuity in Organophosphate Hydrolysis PubMed record: Similar Active Sites and Mechanisms Do Not Lead to Cross-Promiscuity in Organophosphate Hydrolysis
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Purification, kinetic characterization, crystallization and crystallographic analysis of the quorum quenching lactonase from Alicyclobacter acidoterrestris
Acta Cryst F 73:476-480 (2017)
Structural and kinetic characterization of a novel lactonase from the acidothermophilic bacterium A. acidoterrestris.
Read the article: Purification, kinetic characterization, crystallization and crystallographic analysis of the quorum quenching lactonase from Alicyclobacter acidoterrestris PubMed record: Purification, kinetic characterization, crystallization and crystallographic analysis of the quorum quenching lactonase from Alicyclobacter acidoterrestris
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Purification, characterization, crystallization and S-SAD phasing of the Phosphate-Binding Protein from Polaromonas JS666
Acta Cryst F 73:342-346 (2017)
Structural characterization of a phosphate-binding protein from Polaromonas, providing insights into phosphate discrimination mechanisms.
Read the article: Purification, characterization, crystallization and S-SAD phasing of the Phosphate-Binding Protein from Polaromonas JS666 PubMed record: Purification, characterization, crystallization and S-SAD phasing of the Phosphate-Binding Protein from Polaromonas JS666
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Structure of the Cyanuric Acid Hydrolase TrzD Reveals Product Exit Channel
Scientific Reports (2017)
Crystal structure of cyanuric acid hydrolase reveals a product exit channel important for catalytic efficiency.
Read the article: Structure of the Cyanuric Acid Hydrolase TrzD Reveals Product Exit Channel PubMed record: Structure of the Cyanuric Acid Hydrolase TrzD Reveals Product Exit Channel
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Effect of quorum quenching lactonase in clinical isolates of Pseudomonas aeruginosa and comparison with quorum sensing inhibitors
Frontiers in Microbiology (2017)
Compares lactonase-based quorum quenching with chemical QS inhibitors across P. aeruginosa clinical isolates.
Read the article: Effect of quorum quenching lactonase in clinical isolates of Pseudomonas aeruginosa and comparison with quorum sensing inhibitors PubMed record: Effect of quorum quenching lactonase in clinical isolates of Pseudomonas aeruginosa and comparison with quorum sensing inhibitors
2016
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Harnessing hyperthermostable enzymes for biotechnological applications
Scientific Reports (2016)
Explores the biotechnological potential of hyperthermostable lactonases for industrial and medical applications.
Read the article: Harnessing hyperthermostable enzymes for biotechnological applications PubMed record: Harnessing hyperthermostable enzymes for biotechnological applications
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Enzymes for disrupting bacterial communication, an alternative to antibiotics?
Ann Pharm Fr (2016)
Reviews enzymes that interfere with bacterial quorum sensing as potential alternatives to conventional antibiotics.
Read the article: Enzymes for disrupting bacterial communication, an alternative to antibiotics? PubMed record: Enzymes for disrupting bacterial communication, an alternative to antibiotics?
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Purification, characterization, crystallization and crystallographic analysis of the quorum quenching lactonase from Geobacillus caldoxylosilyticus
Acta Cryst F 72:681-6 (2016)
Structural characterization of GcL lactonase, a key enzyme in the lab's quorum quenching research program.
Read the article: Purification, characterization, crystallization and crystallographic analysis of the quorum quenching lactonase from Geobacillus caldoxylosilyticus PubMed record: Purification, characterization, crystallization and crystallographic analysis of the quorum quenching lactonase from Geobacillus caldoxylosilyticus
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Biotechnological applications of quorum quenching enzymes
Chem Biol Interact (2016)
Reviews the diverse biotechnological applications of quorum quenching enzymes across medical and industrial fields.
Read the article: Biotechnological applications of quorum quenching enzymes PubMed record: Biotechnological applications of quorum quenching enzymes
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Current and emerging strategies for organophosphate decontamination: special focus on hyperstable enzymes
Environ Sci Pollut Res Int 23:8200-18 (2016)
Reviews organophosphate decontamination strategies with focus on hyperthermostable enzymes as bio-decontaminants.
Read the article: Current and emerging strategies for organophosphate decontamination: special focus on hyperstable enzymes PubMed record: Current and emerging strategies for organophosphate decontamination: special focus on hyperstable enzymes
2015
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Negative Epistasis and Evolvability in TEM-1 β-Lactamase
J Mol Biol 427:2396-409 (2015)
Explores the thin line between enzyme conformational freedom and disorder through negative epistasis in β-lactamase evolution.
Read the article: Negative Epistasis and Evolvability in TEM-1 β-Lactamase PubMed record: Negative Epistasis and Evolvability in TEM-1 β-Lactamase
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Crystal structure of VmoLac, a tentative quorum quenching lactonase from Vulcanisaeta moutnovskia
Scientific Reports 5:8372 (2015)
First crystal structure of a lactonase from a crenarchaeal extremophile, expanding the known diversity of quorum quenching enzymes.
Read the article: Crystal structure of VmoLac, a tentative quorum quenching lactonase from Vulcanisaeta moutnovskia PubMed record: Crystal structure of VmoLac, a tentative quorum quenching lactonase from Vulcanisaeta moutnovskia
2014
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Inhaled Lactonase Reduces Pseudomonas aeruginosa Quorum Sensing and Mortality in Rat Pneumonia
PLoS One 9(10):e107125 (2014)
Demonstrates that inhaled lactonase reduces P. aeruginosa virulence and mortality in a rat pneumonia model—a key proof-of-concept for therapeutic QQ.
Read the article: Inhaled Lactonase Reduces Pseudomonas aeruginosa Quorum Sensing and Mortality in Rat Pneumonia PubMed record: Inhaled Lactonase Reduces Pseudomonas aeruginosa Quorum Sensing and Mortality in Rat Pneumonia
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Crystal structure of the phosphate-binding protein (PBP-1) of an ABC-type phosphate transporter from Clostridium perfringens
Scientific Reports 4:6636 (2014)
Solves the crystal structure of a phosphate-binding protein from C. perfringens, revealing phosphate recognition mechanisms.
Read the article: Crystal structure of the phosphate-binding protein (PBP-1) of an ABC-type phosphate transporter from Clostridium perfringens PubMed record: Crystal structure of the phosphate-binding protein (PBP-1) of an ABC-type phosphate transporter from Clostridium perfringens
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The DING Family of Phosphate Binding Proteins in Inflammatory Diseases
Adv Exp Med Biol 824:27-32 (2014)
Reviews the role of DING phosphate-binding proteins in inflammatory disease pathways.
Read the article: The DING Family of Phosphate Binding Proteins in Inflammatory Diseases PubMed record: The DING Family of Phosphate Binding Proteins in Inflammatory Diseases
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SacPox from the thermoacidophilic crenarchaeon Sulfolobus acidocaldarius is a proficient lactonase
BMC Research Notes 7:333 (2014)
Characterizes SacPox lactonase from an extreme acidothermophilic archaeon, expanding the repertoire of thermostable QQ enzymes.
Read the article: SacPox from the thermoacidophilic crenarchaeon Sulfolobus acidocaldarius is a proficient lactonase PubMed record: SacPox from the thermoacidophilic crenarchaeon Sulfolobus acidocaldarius is a proficient lactonase
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Ambiguous evidence for assigning DddQ as a dimethylsulfoniopropionate lyase
PNAS 111:E2078-9 (2014)
Critical analysis of evidence for DddQ function in oceanic dimethylsulfide production, highlighting the need for rigorous biochemical characterization.
Read the article: Ambiguous evidence for assigning DddQ as a dimethylsulfoniopropionate lyase PubMed record: Ambiguous evidence for assigning DddQ as a dimethylsulfoniopropionate lyase
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Ancestral mutations as a tool for solubilizing proteins: the case of a hydrophobic phosphate-binding protein
FEBS Open Bio 4:121-7 (2014)
Demonstrates ancestral sequence reconstruction as a strategy for improving protein solubility in recombinant expression.
Read the article: Ancestral mutations as a tool for solubilizing proteins: the case of a hydrophobic phosphate-binding protein PubMed record: Ancestral mutations as a tool for solubilizing proteins: the case of a hydrophobic phosphate-binding protein
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The Universality of Enzymatic Rate-Temperature Dependency
Trends in Biochemical Sciences 39:1-7 (2014)
Establishes universal principles governing how enzyme catalytic rates depend on temperature across diverse enzyme families.
Read the article: The Universality of Enzymatic Rate-Temperature Dependency PubMed record: The Universality of Enzymatic Rate-Temperature Dependency
2013
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Structural and enzymatic characterization of the phosphotriesterase OPHC2
PLoS One 8:e77995 (2013)
Structural and functional characterization of the organophosphorus hydrolase OPHC2 from Pseudomonas pseudoalcaligenes.
Read the article: Structural and enzymatic characterization of the phosphotriesterase OPHC2 PubMed record: Structural and enzymatic characterization of the phosphotriesterase OPHC2
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Crystallization and preliminary X-ray diffraction analysis of the lactonase VmoLac
Acta Cryst F 69:1235-8 (2013)
Crystallization of VmoLac lactonase from the extremophilic crenarchaeon V. moutnovskia for structural analysis.
Read the article: Crystallization and preliminary X-ray diffraction analysis of the lactonase VmoLac PubMed record: Crystallization and preliminary X-ray diffraction analysis of the lactonase VmoLac
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Crystallization and preliminary X-ray diffraction analysis of a high affinity phosphate-binding protein from P. aeruginosa
Acta Cryst F 69:1143-1146 (2013)
Crystallographic analysis of a phosphate-binding protein with phosphatase activity from the pathogen P. aeruginosa.
Read the article: Crystallization and preliminary X-ray diffraction analysis of a high affinity phosphate-binding protein from P. aeruginosa PubMed record: Crystallization and preliminary X-ray diffraction analysis of a high affinity phosphate-binding protein from P. aeruginosa
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Differential active site loop conformations mediate promiscuous activities in the lactonase SsoPox
PLoS One 8:e75272 (2013)
Reveals how different active site loop conformations enable catalytic promiscuity between lactonase and phosphotriesterase activities in SsoPox.
Read the article: Differential active site loop conformations mediate promiscuous activities in the lactonase SsoPox PubMed record: Differential active site loop conformations mediate promiscuous activities in the lactonase SsoPox
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Hydrogen atoms in protein structures: high-resolution X-ray diffraction structure of the DFPase
BMC Research Notes 6:308 (2013)
Sub-ångström resolution X-ray structure revealing hydrogen atom positions in an enzyme active site.
Read the article: Hydrogen atoms in protein structures: high-resolution X-ray diffraction structure of the DFPase PubMed record: Hydrogen atoms in protein structures: high-resolution X-ray diffraction structure of the DFPase
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What makes a protein fold amenable to functional innovation? Fold polarity and stability tradeoffs
J Mol Biol 425:2609-21 (2013)
Identifies structural properties of protein folds that enable or constrain functional innovation during evolution.
Read the article: What makes a protein fold amenable to functional innovation? Fold polarity and stability tradeoffs PubMed record: What makes a protein fold amenable to functional innovation? Fold polarity and stability tradeoffs
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Crystallization and X-ray analysis of a DING protein from Pseudomonas aeruginosa PA14
Acta Cryst F 69:425-9 (2013)
Crystallographic study of a DING protein from P. aeruginosa providing structural insights into this enigmatic protein family.
Read the article: Crystallization and X-ray analysis of a DING protein from Pseudomonas aeruginosa PA14 PubMed record: Crystallization and X-ray analysis of a DING protein from Pseudomonas aeruginosa PA14
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Catalytic metal ion rearrangements underline promiscuity and evolvability of a metalloenzyme
J Mol Biol 425:1028-38 (2013)
Demonstrates how catalytic metal ion rearrangements enable enzyme promiscuity and evolutionary potential.
Read the article: Catalytic metal ion rearrangements underline promiscuity and evolvability of a metalloenzyme PubMed record: Catalytic metal ion rearrangements underline promiscuity and evolvability of a metalloenzyme
2012
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DING proteins, their biochemical and structural properties, and their ability to inhibit HIV-1 replication
Bulletin de l'Académie Nationale de Médecine 196(3):693-703 (2012)
Describes DING phosphate-binding proteins, the sub-Angstrom structures that explain how they bind phosphate, and the ability of human phosphate binding protein to inhibit HIV replication.
Read the article: DING proteins, their biochemical and structural properties, and their ability to inhibit HIV-1 replication PubMed record: DING proteins, their biochemical and structural properties, and their ability to inhibit HIV-1 replication
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Crystallization and preliminary X-ray diffraction analysis of the organophosphorus hydrolase OPHC2
Acta Cryst F 69:73-6 (2012)
Initial crystallographic characterization of the organophosphorus hydrolase OPHC2.
Read the article: Crystallization and preliminary X-ray diffraction analysis of the organophosphorus hydrolase OPHC2 PubMed record: Crystallization and preliminary X-ray diffraction analysis of the organophosphorus hydrolase OPHC2
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Characterisation of the organophosphate hydrolase catalytic activity of SsoPox
Scientific Reports 2:779 (2012)
Kinetic characterization of SsoPox phosphotriesterase activity, establishing this thermostable enzyme as a decontamination candidate.
Read the article: Characterisation of the organophosphate hydrolase catalytic activity of SsoPox PubMed record: Characterisation of the organophosphate hydrolase catalytic activity of SsoPox
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Structural and Enzymatic characterization of the lactonase SisLac from Sulfolobus islandicus
PLoS One 7(10):e47028 (2012)
Structure and enzymology of SisLac, an archaeal lactonase with both quorum quenching and phosphotriesterase activities.
Read the article: Structural and Enzymatic characterization of the lactonase SisLac from Sulfolobus islandicus PubMed record: Structural and Enzymatic characterization of the lactonase SisLac from Sulfolobus islandicus
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The molecular basis of phosphate discrimination in arsenate rich environments
Nature 491(7422):134-7 (2012)
Reveals the remarkable molecular mechanism by which bacteria discriminate between essential phosphate and toxic arsenate—a key survival strategy in extreme environments.
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Catalytic versatility and backups in enzyme active sites: The case of serum paraoxonase 1
J Mol Biol 418:181-96 (2012)
Demonstrates catalytic versatility and redundancy in paraoxonase 1 active site mechanisms.
Read the article: Catalytic versatility and backups in enzyme active sites: The case of serum paraoxonase 1 PubMed record: Catalytic versatility and backups in enzyme active sites: The case of serum paraoxonase 1
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The Level of DING proteins is increased in HIV-infected patients
PLoS One 7:e33062 (2012)
Shows elevated DING protein levels in HIV-infected patients through in vitro and in vivo studies.
Read the article: The Level of DING proteins is increased in HIV-infected patients PubMed record: The Level of DING proteins is increased in HIV-infected patients
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Divergence and Convergence in Enzyme Evolution: The Parallel Evolution of Paraoxonases from Quorum Quenching Lactonases
J Biol Chem 287:11-20 (2012)
Establishes the evolutionary relationship between paraoxonases and lactonases, showing parallel evolution of these enzyme families.
Read the article: Divergence and Convergence in Enzyme Evolution: The Parallel Evolution of Paraoxonases from Quorum Quenching Lactonases PubMed record: Divergence and Convergence in Enzyme Evolution: The Parallel Evolution of Paraoxonases from Quorum Quenching Lactonases
2011
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Human-Phosphate-Binding-Protein inhibits HIV-1 gene transcription and replication
Virology Journal 8:352 (2011)
Discovers that human phosphate-binding protein can inhibit HIV-1 replication, suggesting potential therapeutic applications.
Read the article: Human-Phosphate-Binding-Protein inhibits HIV-1 gene transcription and replication PubMed record: Human-Phosphate-Binding-Protein inhibits HIV-1 gene transcription and replication
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Directed evolution of sulfotransferases and paraoxonases by ancestral libraries
J Mol Biol 411:837-53 (2011)
Develops ancestral library approaches for directed evolution of sulfotransferases and paraoxonases.
Read the article: Directed evolution of sulfotransferases and paraoxonases by ancestral libraries PubMed record: Directed evolution of sulfotransferases and paraoxonases by ancestral libraries
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Crystallization and preliminary X-ray diffraction analysis of the hyperthermophilic S. islandicus lactonase
Acta Cryst F 67:354-357 (2011)
Crystallographic characterization of a hyperthermophilic lactonase for structural studies.
Read the article: Crystallization and preliminary X-ray diffraction analysis of the hyperthermophilic S. islandicus lactonase PubMed record: Crystallization and preliminary X-ray diffraction analysis of the hyperthermophilic S. islandicus lactonase
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Structural insights and ab initio sequencing within the DING proteins family
J Synchrotron Radiation 18:45-9 (2011)
Reviews structural insights from high-resolution crystallography of DING protein family members.
Read the article: Structural insights and ab initio sequencing within the DING proteins family PubMed record: Structural insights and ab initio sequencing within the DING proteins family
2010
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Eukaryotic DING proteins are endogenous: an immunohistological study in mouse tissues
PLoS One 5(2):e9099 (2010)
Immunohistological evidence that DING proteins are endogenously expressed in mouse tissues.
Read the article: Eukaryotic DING proteins are endogenous: an immunohistological study in mouse tissues PubMed record: Eukaryotic DING proteins are endogenous: an immunohistological study in mouse tissues
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Integrative analytical approach for deciphering cofactors that modulate activity and stability of human paraoxonase (PON1)
J Chromatography B 878:1346-55 (2010)
Integrative analytical approach combining capillary electrophoresis and high-pressure kinetics for PON1 characterization.
Read the article: Integrative analytical approach for deciphering cofactors that modulate activity and stability of human paraoxonase (PON1) PubMed record: Integrative analytical approach for deciphering cofactors that modulate activity and stability of human paraoxonase (PON1)
2009
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Elucidation of the phosphate binding mode of DING proteins revealed by sub-Ångstrom X-ray crystallography
JACS 131:7879-86 (2009)
Sub-ångström crystallography reveals the precise phosphate binding mechanism in DING proteins—among the highest resolution enzyme structures solved.
Read the article: Elucidation of the phosphate binding mode of DING proteins revealed by sub-Ångstrom X-ray crystallography PubMed record: Elucidation of the phosphate binding mode of DING proteins revealed by sub-Ångstrom X-ray crystallography
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Evidence for Phosphatase Activity of p27SJ and Its Impact on the Cell Cycle
J Cell Biol 107:400-7 (2009)
Identifies phosphatase activity in p27SJ protein and demonstrates its impact on cell cycle regulation.
Read the article: Evidence for Phosphatase Activity of p27SJ and Its Impact on the Cell Cycle PubMed record: Evidence for Phosphatase Activity of p27SJ and Its Impact on the Cell Cycle
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For Whom the Bell Tolls? DING Proteins in Health and Disease
Cell Mol Life Science 66:2205-18 (2009)
Comprehensive review of DING proteins and their roles across health and disease contexts.
Read the article: For Whom the Bell Tolls? DING Proteins in Health and Disease PubMed record: For Whom the Bell Tolls? DING Proteins in Health and Disease
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Structural determinants of the high thermal stability of SsoPox from the hyperthermophilic archeon Sulfolobus solfataricus
Extremophiles 13:461-70 (2009)
Identifies the structural features responsible for the remarkable thermostability of SsoPox phosphotriesterase/lactonase.
Read the article: Structural determinants of the high thermal stability of SsoPox from the hyperthermophilic archeon Sulfolobus solfataricus PubMed record: Structural determinants of the high thermal stability of SsoPox from the hyperthermophilic archeon Sulfolobus solfataricus
2008
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Structural basis for a natural lactonase and promiscuous organophosphate hydrolysis activities
J Mol Biol 379:1017-28 (2008)
Landmark paper establishing the structural basis for dual lactonase/phosphotriesterase activity—the foundation of the lab's research program.
Read the article: Structural basis for a natural lactonase and promiscuous organophosphate hydrolysis activities PubMed record: Structural basis for a natural lactonase and promiscuous organophosphate hydrolysis activities
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Tandem use of X-ray crystallography and mass spectrometry to obtain ab initio the complete amino acids sequence of HPBP
Proteins 71:1708-1720 (2008)
Innovative combined crystallography-mass spectrometry approach to determine the complete sequence of human phosphate-binding protein.
Read the article: Tandem use of X-ray crystallography and mass spectrometry to obtain ab initio the complete amino acids sequence of HPBP PubMed record: Tandem use of X-ray crystallography and mass spectrometry to obtain ab initio the complete amino acids sequence of HPBP
2007
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Stabilisation of the active form(s) of human paraoxonase by human phosphate binding protein
Biochem Soc Trans 35:1616-20 (2007)
Demonstrates that human phosphate-binding protein stabilizes the active forms of paraoxonase.
Read the article: Stabilisation of the active form(s) of human paraoxonase by human phosphate binding protein PubMed record: Stabilisation of the active form(s) of human paraoxonase by human phosphate binding protein
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Structure-Function Relationships in a Bacterial DING Protein
FEBS Letters 581:3455-60 (2007)
Structure-function analysis of a bacterial DING protein from Pseudomonas fluorescens.
Read the article: Structure-Function Relationships in a Bacterial DING Protein PubMed record: Structure-Function Relationships in a Bacterial DING Protein
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Crystallization, diffraction data collection and preliminary crystallographic analysis of DING protein from Pseudomonas fluorescens
Acta Cryst F 63:590-592 (2007)
Initial crystallographic characterization of a bacterial DING protein.
Read the article: Crystallization, diffraction data collection and preliminary crystallographic analysis of DING protein from Pseudomonas fluorescens PubMed record: Crystallization, diffraction data collection and preliminary crystallographic analysis of DING protein from Pseudomonas fluorescens
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Crystallization and preliminary X-ray diffraction analysis of the hyperthermophilic SsoPox phosphotriesterase
Acta Cryst F 63:553-555 (2007)
First crystallographic study of SsoPox—the beginning of the lab's long-term investigation of this hyperthermostable enzyme.
Read the article: Crystallization and preliminary X-ray diffraction analysis of the hyperthermophilic SsoPox phosphotriesterase PubMed record: Crystallization and preliminary X-ray diffraction analysis of the hyperthermophilic SsoPox phosphotriesterase